Three tools to scan a Linux server for Malware and Rootkits
This tutorial exists for these OS versions
- Debian 5 (Lenny)
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Servers connected to the internet are seeing a constant level of attacks and scans all day. While a firewall and regular system updates are a good first defense to keep the system safe, you should also check regularly that no attacker got in. The tools described in this tutorial are made for these sanity checks, they scan for malware, viruses, and rootkits. They should be run regularly, e.g. every night and send reports to you by email. You can also use Chkrootkit, Rkhunter, and ISPProtect to scan a system when you see suspicious activity like high load, suspicious processes or when the server suddenly starts to send malware.
All these scanners have to be run as root user. Login as root before you continue or run "sudo su" on Ubuntu to become root user.
chkrootkit - Linux rootkit scanner
Chkrootkit is a classic rootkit scanner. It checks your server for suspicious rootkit processes and checks for a list of known rootkit files.
Either install the package that comes with your distribution (on Debian and Ubuntu you would run
apt-get install chkrootkit
), or download the sources from www.chkrootkit.org and install manually:
wget --passive-ftp ftp://ftp.pangeia.com.br/pub/seg/pac/chkrootkit.tar.gz
tar xvfz chkrootkit.tar.gz
Afterward, you can move the chkrootkit directory somewhere else, e.g. /usr/local/chkrootkit:
mv chkrootkit-<version>/ /usr/local/chkrootkit
and create a symlink for easy access:
ln -s /usr/local/chkrootkit/chkrootkit /usr/local/bin/chkrootkit
To check your server with chkrootkit, run the command:
A common false positive report is:
Checking `bindshell'... INFECTED (PORTS: 465)
Don't worry when you get this message on an email server, this is the SMTPS (Secure SMTP) port of your mail system and a well known false positive.
You can even run chkrootkit by a cron job and get the results emailed to you. First, find out the path where chkrootkit is installed on your server with:
root@server1:/tmp/chkrootkit-0.50# which chkrootkit
Chkrootkit is installed in the path /usr/sbin/chkrootkit, we need this path in the cron line below:
To create a cron job like this:
0 3 * * * /usr/sbin/chkrootkit 2>&1 | mail -s "chkrootkit output of my server" firstname.lastname@example.org)
That would run chkrootkit every night a 3.00h. Replace the path to chkrootkit with the one that you got from which command above and exchange the email address with your real address.
Lynis - Universal security auditing tool and rootkit scanner
Lynis (formerly rkhunter) is a security auditing tool for Linux and BSD based systems. It performs a detailed auditing of many security aspects and configurations of your system. Download the latest Lynis sources from https://cisofy.com/download/lynis/:
tar xvfz lynis-2.4.8.tar.gz
mv lynis /usr/local/
ln -s /usr/local/lynis/lynis /usr/local/bin/lynis
This will install Lynis to the directory /usr/local/lynis and creates a symlink for easy access. Now run
lynis update info
to check if you use the latest version.
Now you can scan your system for rootkits by running:
lynis audit system
Lynis will perform a few checks and then stops to give you some time to read the results. Press [ENTER] to continue with the scan.
At the end, it will show you a summary of the scan.
To run Lynis non-interactively, start it with the --quick option:
To run Lynis automatically at night, create a cron job like this:
0 3 * * * /usr/local/bin/lynis --quick 2>&1 | mail -s "lynis output of my server" email@example.com)
This will run lynis every night a 3.00h. Replace the email address with your real address.
ISPProtect - Website malware scanner
ISPProtect is a malware scanner for web servers, it scans for malware in website files and CMS systems like Wordpress, Joomla, Drupal etc. If you run a web hosting server, then the hosted websites are the most attacked part of your server and it is recommended to do sanity checks on them regularly. ISPProtect contains 5 scanning engines:
- Signature-based malware scanner.
- Heuristic malware scanner.
- A scanner to show the installation directories of outdated CMS systems.
- A scanner that shows you all outdated WordPress plugins of the whole server.
- A database content scanner which checks MySQL databases for potentially malicious content.
ISPProtect is not free software, but there is a free trial that can be used without registration to test it or clean an infected system.
ISPProtect requires PHP to be installed on the server, this should be the case on most hosting systems. In case you don't have a command line PHP installed yet, execute:
apt-get install php5-cli
on Debian or Ubuntu or:
yum install php
on Fedora and CentOS.
Run the following commands to install ISPProtect.
mkdir -p /usr/local/ispprotect chown -R root:root /usr/local/ispprotect chmod -R 750 /usr/local/ispprotect cd /usr/local/ispprotect wget http://www.ispprotect.com/download/ispp_scan.tar.gz tar xzf ispp_scan.tar.gz rm -f ispp_scan.tar.gz ln -s /usr/local/ispprotect/ispp_scan /usr/local/bin/ispp_scan
To start ISPProtect, run:
The scanner automatically checks for updates, then asks for the key (enter the word "trial" here) and then asks for the path of the websites, normally that's /var/www.
Please enter scan key: <-- trial
Please enter path to scan: <-- /var/www
The scanner will now start the scan. The scanning progress is shown. The names of the infected files are shown on the screen at the end of the scan and the results are stored in file sin the ISPProtect install directory for later use:
After the scan is completed, you will find the results also in the following files:
Malware => /usr/local/ispprotect/found_malware_20170228201238.txt
Wordpress => /usr/local/ispprotect/software_wordpress_20170228201238.txt
Joomla => /usr/local/ispprotect/software_joomla_20170228201238.txt
Drupal => /usr/local/ispprotect/software_drupal_20170228201238.txt
Mediawiki => /usr/local/ispprotect/software_mediawiki_20170228201238.txt
Contao => /usr/local/ispprotect/software_contao_20170228201238.txt
Magentocommerce => /usr/local/ispprotect/software_magentocommerce_20170228201238.txt
Woltlab Burning Board => /usr/local/ispprotect/software_woltlab_burning_board_20170228201238.txt
Cms Made Simple => /usr/local/ispprotect/software_cms_made_simple_20170228201238.txt
Phpmyadmin => /usr/local/ispprotect/software_phpmyadmin_20170228201238.txt
Typo3 => /usr/local/ispprotect/software_typo3_20170228201238.txt
Roundcube => /usr/local/ispprotect/software_roundcube_20170228201238.txt
Shopware => /usr/local/ispprotect/software_shopware_20170228201238.txt
Mysqldumper => /usr/local/ispprotect/software_mysqldumper_20170228201238.txt
Starting scan level 1 ...
To run ISPProtect automatically as a nightly cronjob, create a cron file with nano:
and insert the following line:
0 3 * * * root /usr/local/ispprotect/ispp_scan --update && /usr/local/ispprotect/ispp_scan --path=/var/www --email-results=root@localhost --non-interactive --scan-key=AAA-BBB-CCC-DDD
Replace "root@localhost" with your email address, the scan report is sent to this address. Then exchange "AAA-BBB-CCC-DDD" with your license key. You can get a license key here.