Actual Problem - Websites/DNS
My problem was that I added three web sites including DNS entries for all three and only 1 of the three websites was I able to browse to.
After running the server.sh script and restarting named several times over a span of about 15 minutes the two sites still came back with http 404 file not found. But the default index.html file was there.
So I deleted the DNS entries and the websites, ran server.sh, restarted named, recreated the websites and the DNS entries. Even though the DNS entries showed in the ISPConfig web console the DNS entries were not added to named.conf.local and the zone files such as /var/named/pri.mrcomptech.com were not created even after about 20 minutes.
That's when I ran the server.sh script and it gave the error that a task was already running and using "ps -A | grep -i server" I cold see that it was still running after probazbly about 15 minutes.
So I deleted the DNS entries, the three websites that i had just created, the deleted the ispconfig lock file "/usr/local/ispconfig/server/temp/.ispconfig_lock" then rebooted.
After the reboot I recreated the websites and DNS entries then all was fine.
Apparently, the server.sh script could not finish running, since debug was not on at the time a don't know were it stopped in it's execution.