Hello Again,
Back with a fresh box! This time the hardware checks out

I am still attempting to install ISPConfig on a fresh Ubuntu distro. The Ubuntu was installed following the "Perfect Setup - Ubuntu 6.06 LTS Server" here on howtoforge. Like the last time, I then moved immediately on to installing ISPConfig.
This time it seems that './setup' almost finished this time, but had errors about missing directories. Any tips on what to try next?
Code:
Build complete.
(It is safe to ignore warnings about tempnam and tmpnam).
Installing PHP SAPI module: apache
[activating module `php5' in /root/ispconfig/httpd/conf/httpd.conf]
cp libs/libphp5.so /root/ispconfig/httpd/libexec/libphp5.so
chmod 755 /root/ispconfig/httpd/libexec/libphp5.so
cp /root/ispconfig/httpd/conf/httpd.conf /root/ispconfig/httpd/conf/httpd.conf.bak
cp /root/ispconfig/httpd/conf/httpd.conf.new /root/ispconfig/httpd/conf/httpd.conf
rm /root/ispconfig/httpd/conf/httpd.conf.new
Installing PHP CLI binary: /root/ispconfig/php/bin/
Installing PHP CLI man page: /root/ispconfig/php/man/man1/
Installing build environment: /root/ispconfig/php/lib/php/build/
Installing header files: /root/ispconfig/php/include/php/
Installing helper programs: /root/ispconfig/php/bin/
program: phpize
program: php-config
Installing man pages: /root/ispconfig/php/man/man1/
page: phpize.1
page: php-config.1
Installing PDO headers: /root/ispconfig/php/include/php/ext/pdo/
tar: /root/ispconfig/install_ispconfig/compile_aps/../binaries/aps.tar.gz: Cannot open: No such file or directory
tar: Error is not recoverable: exiting now
ERROR: Could not create aps.tar.gz
./compile: line 87: cd: /root/ispconfig/install_ispconfig/compile_aps: No such file or directory
./setup2: line 794: cd: /root/ispconfig/install_ispconfig/compile_aps/../..: No such file or directory
cd: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
mv: cannot stat `binaries/aps.tar.gz': No such file or directory
mv: cannot stat `binaries/spamassassin.tar.gz': No such file or directory
mv: cannot stat `binaries/uudeview.tar.gz': No such file or directory
mv: cannot stat `binaries/clamav.tar.gz': No such file or directory
mv: cannot stat `binaries/cronolog': No such file or directory
mv: cannot stat `binaries/cronosplit': No such file or directory
mv: cannot stat `binaries/ispconfig_tcpserver': No such file or directory
mv: cannot stat `binaries/zip': No such file or directory
mv: cannot stat `binaries/unzip': No such file or directory
tar: spamassassin.tar.gz: Cannot open: No such file or directory
tar: Error is not recoverable: exiting now
tar: Child returned status 2
tar: Error exit delayed from previous errors
mv: cannot stat `spamassassin': No such file or directory
tar: uudeview.tar.gz: Cannot open: No such file or directory
tar: Error is not recoverable: exiting now
tar: Child returned status 2
tar: Error exit delayed from previous errors
mv: cannot stat `uudeview': No such file or directory
tar: clamav.tar.gz: Cannot open: No such file or directory
tar: Error is not recoverable: exiting now
tar: Child returned status 2
tar: Error exit delayed from previous errors
mv: cannot stat `clamav': No such file or directory
tar: aps.tar.gz: Cannot open: No such file or directory
tar: Error is not recoverable: exiting now
tar: Child returned status 2
tar: Error exit delayed from previous errors
./setup2: line 816: ispconfig_tmp/php/bin/php: No such file or directory
ERROR: The PHP binary coming with ISPConfig does not work properly on your system! The installation routine stops here!
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