Web Site Problem

[TinkerAllison]

I installed ISPConfig and I'm having a problem with the web server. When I go to one of the sites that I created and I get the default index page. I load the site using an FTP program and connected to the site, www.the-allisons.us, and changed to the web folder and then transfered the files. When I look in the server folder, /var/www/web5/web, all of the files for the site are there. I have this same problem with all of the sites that I've created with ISPConfig. I've look at all of the HTTPD config files and i can't find anything wrong. Has anyone else run into this problem?