Hi Falko thanks for replying.
I followed this guide to create my certificate in the first place, the only difference is I'm using GoDaddy SSL certificate. All services, postfix, dovecot, httpd are working fine with breezee mail and site, the only problem is the ispconfig interface.
Everything is referenced or symlinked to the same keys and keychain file (which in this case is the gd_bundle.crt downloaded with breezee.com.crt from GoDaddy)
Why would it give the ssl error the first while at boot and then after around 15 mins it doesn't give this error and keeps loading trying to connect until it times out without any output or error, I don't know. The other thing is that it was running normal for more than a week and used to login it to the interface everyday to check the Quota numbers, what broke it suddenly, I don't know.
I'm not sure what else I can do to try and fix it, I know when it's resolved (hopefully ofcourse) it might be a very simple thing I'm missing somehwere.