Now i re-installed and followed the perfect setup guide AGAIN replacing the files that we're missing with the upgraded versions on the apt-get but now i have another problem.
If i go to my domain or any of the domains pointing to my server then it loads up the directory listing for /var/www and not the correct redirection ... Also one of my pages uses PHP and when i try to load the page by clicking the shortcuts on the directory index then i get the PHP Code and not the webpage .... I followed the guide down to the last letter apart from where i had to upgrade the Dev Packages.
Any advice on this one??