The logfiles you are talking about are the logfiles of the main webserver and not of the ISPConfig webserver.
The problem is caused by the fact that the php programming language is not able to open files > 2 GB. There is a documented switch to compile php for file support > 2 GB, but we tested it and it does not work on most linux distributions so we can not use this.
If you want to remove the logging, which will disable all web statistics in ISPConfig, remove the web log and webalizer scripts from the root crontab and the log line that logs trough cronolog in your apache configuration file (it is the custom log directive at the end of the file where ISPConfig inserted some lines).
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