I'd make a backup of all important files before you install ISPConfig. You could also make an image of your current installation before you install ISPconfig. There's a howto aboout this:
http://www.howtoforge.com/howto_linux_systemimager
Then, after you'e unpacked ISPConfig and
before you run
, have a look at
dist.txt and the files in the
mod directory. As you have a non-standard Apache installation, you might have to adjust these files a little bit.