Got the same problems, but after this ispconfig dont detect an upgrade. So it warn me that some files vil be replaced. Will i lose all my settings?? (Help

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Message i get after error problems (dont detect an upgrade)::
With the system installation, some system files are replaced where adjustments were made. This can lead to loss of entries in httpd.conf, named.conf as well as in the Sendmail configuration.
Running Suse 10
Need to fix this ASAP? Could someone help me??