Well I just set up an exit; to the bastille firewallscript so that ISPConfigs settings do not influence my iptables settings set up with firehol (firehol.sf.net, an abstraction shellscript, easy to configure and very flexible) maybe that can help you?
Because I set up a NAT rule to forward a port served by our proxy to 81 which is messed up everytime I restart any service with ipsconfig...
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