I have install per your Perfect Ubuntu 12.10 server howto and am having an issue with getting my certificate to work properly.
I've entered the ip address and am not using a wildcard and I have verifed that the certs are in-fact in the /var/www/sitename/ssl directory. SSL is checked on the proper page but when browsing to https://mysite.com
I get a 701 error and the apache2 error log reads :
client denied by server configuration: /var/www/
I can get to the non https site just fine but can't get the server configured to pull files from the proper location.
I've tried deleting the domain and re-creating it with no luck. It also seems that the virtual host file in /var/www/apache2/sites-enabled makes no mention of port 443 or ssl.
Thanks for your help!