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but now I checked the settings for a particular client and found he was using different values. So I found out he was using this php.ini /var/www/conf/web1/php.ini which seems to have been generated because I added some Custom php.ini settings when I configured his site in ispcfg3
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correct.
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now which one takes precedence?
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/var/www/conf/web1/php.ini
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How can I update his local copy to my updated one?
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Change a value in the custom php.ini settings and click on save.