Hey I'm having a similar problem - I followed the perfect Debian sarge install.
Basically the server is fine... most of the time, but it goes down for periods of time where nothing will work - when trying to connect to websites it just times out. It wont' reply to pings, and email services are down.
This is my dmesg output related to the ethernet.
~# dmesg | grep e100
BIOS-e820: 00000000fee00000 - 00000000fee10000 (reserved)
e100: selftest OK.
e100: eth0: Intel(R) PRO/100 Network Connection
e100: selftest OK.
e100: eth1: Intel(R) PRO/100 Network Connection
e100: eth1 NIC Link is Up 100 Mbps Full duplex
I'm not really sure why this is happening. Have you found anything yet?
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