Try this...
1. Upload the 2 key files from Godaddy to the ssl directory of the domain concerned (gd_bundle.crt and yourname.crt), then
2. In the ISPConfig panel, go to the domain concerned, add the apache directive:
SSLCertificateChainFile /var/www/web#/ssl/gd_bundle.crt
[replace the above # with the domain number]
3. Restart http (i.e. service httpd restart)
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