Download the latest ispconfig (3.0.1.6), unpavk it and then run the update.php script again and select to reconfigure services. It is not nescessary to change any file manually on centos 5.4 32bit or 64Bit, and I'am doing this installs daily, they are just working out of the box. Make sure that you followed the perfect server guide to the letter before you installed ispconfig.
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