No you have misuderstood, with the php lines removed, I goto
http://mysite.com/uploads/ and I get a directory list, which is what I want, however, with the php lines I goto
http://mysite.com/uploads/ and I get the error:
[Fri Mar 27 16:14:08 2009] [error] [client 192.168.1.1] client denied by server configuration: /var/www/mysite.com/web/uploads/index.php
I do not know why it is looking for index.php :s