Well I spoke too soon.
$go_info["server"]["apache2_php"] = 'both';
$go_info["server"]["apache2_php"] = 'addtype';
Worked for a while, but I had to restart apache after changing my php.ini file and now my site won't load if I check SSL.
I rechecked the config.inc.php file and it hasn't changed.
Is there any hope for ISPconfig supporting SSL? I really like it but I need SSL support.