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Mono support could be fairly easily added to ISPConfig - it would just need a couple of lines added to the vhost config in the same way the PHP config is added when selected by the check box.

Here's the following amendments I made to my Fedora Core 4 install to add Mono.

httpd.conf - place anywhere really, I put it just above the ispconfig log statement

Code:

AddHandler mono .aspx .ascx .asax .ashx .config .cs .asmx .axd

Vhosts_ispconfig.conf - this data should be added when "ASP.NET" support is chosen when adding a site

Code:

MonoApplications '/:/home/web6/web'

MonoDocumentRootDir '/home/web6/web'

I'm sure this could be easily patched in by copying and modifying the PHP sections of the New Site / Edit Site pages :)